Literature Research
Goal
Search academic databases and perform comprehensive literature reviews.
Scripts
./scripts/pubmed_literature_search.py - Search PubMed./scripts/literature_deep_review.py - Deep review with Claude
Usage
Search PubMed
python3 ./scripts/pubmed_literature_search.py \
--query "machine learning cancer diagnosis" \
--limit 50 \
--output .tmp/papers.json
Deep Review
python3 ./scripts/literature_deep_review.py \
--input .tmp/papers.json \
--output .tmp/review.md
Output
- JSON file with paper metadata
- Markdown review with key findings, themes, gaps
Schema
Inputs
| Name | Type | Required | Description |
|---|
query | string | Yes | Research query (e.g., 'machine learning cancer diagnosis') |
limit | integer | No | Max papers to fetch (default: 50) |
Outputs
| Name | Type | Description |
|---|
papers_file | file_path | JSON file with paper metadata |
review_file | file_path | Markdown review with key findings, themes, gaps |
Credentials
| Name | Source |
|---|
ANTHROPIC_API_KEY | .env |
Cost
Free (PubMed API) + Claude for review