pubmed-metaanalysis

Search PubMed for meta-analyses and systematic reviews on medical topics using the NCBI E-utilities API. I help you:

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Install skill "pubmed-metaanalysis" with this command: npx skills add richardanaya/agent-skills/richardanaya-agent-skills-pubmed-metaanalysis

What I Do

Search PubMed for meta-analyses and systematic reviews on medical topics using the NCBI E-utilities API. I help you:

  • Find meta-analyses on specific medical conditions, treatments, or interventions

  • Retrieve article titles, authors, publication dates, and abstracts

  • Filter results to focus on systematic reviews and meta-analyses only

When to Use Me

Use this skill when you need to:

  • Look up meta-analyses on a medical topic

  • Find systematic reviews for evidence-based research

  • Get an overview of aggregated research on a health topic

How to Search PubMed for Meta-Analyses

Step 1: Search for Article IDs

Use the NCBI ESearch API to find meta-analyses. The key is adding the meta-analysis[pt] publication type filter.

Base URL:

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi

Required Parameters:

  • db=pubmed

  • Search the PubMed database

  • term=<SEARCH_QUERY>+AND+meta-analysis[pt]

  • Your search term + meta-analysis filter

  • retmax=20

  • Number of results to return (adjust as needed)

  • retmode=json

  • Return JSON format

Example Search URL:

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&#x26;term=diabetes+treatment+AND+meta-analysis[pt]&#x26;retmax=20&#x26;retmode=json

Alternative Filters:

  • systematic+review[pt]

  • For systematic reviews

  • (meta-analysis[pt]+OR+systematic+review[pt])

  • For both types

Step 2: Fetch Article Details

Use the NCBI ESummary or EFetch API to get article details using the IDs from Step 1.

ESummary (for basic info):

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&#x26;id=&#x3C;ID1>,&#x3C;ID2>,&#x3C;ID3>&#x26;retmode=json

EFetch (for full abstract):

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pubmed&#x26;id=&#x3C;ID1>,&#x3C;ID2>,&#x3C;ID3>&#x26;rettype=abstract&#x26;retmode=text

Step 3: Parse and Present Results

From ESummary JSON response, extract:

  • title

  • Article title

  • authors

  • List of authors (use first author + "et al." for brevity)

  • pubdate

  • Publication date

  • source

  • Journal name

  • uid

  • PubMed ID (PMID)

Complete Example Workflow

Search for meta-analyses on "hypertension treatment":

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&#x26;term=hypertension+treatment+AND+meta-analysis[pt]&#x26;retmax=10&#x26;retmode=json

Get details for returned IDs (e.g., 12345678,23456789):

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&#x26;id=12345678,23456789&#x26;retmode=json

Get full abstracts:

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pubmed&#x26;id=12345678,23456789&#x26;rettype=abstract&#x26;retmode=text

Search Tips

Effective Search Terms

  • Use MeSH terms when possible (e.g., "Diabetes Mellitus, Type 2"[Mesh] )

  • Combine terms with AND or OR

  • Use quotes for exact phrases: "cognitive behavioral therapy"

Common Filters

Filter Description

meta-analysis[pt]

Meta-analyses only

systematic+review[pt]

Systematic reviews only

review[pt]

All review articles

free+full+text[filter]

Only free full-text articles

humans[mh]

Human studies only

english[la]

English language only

Date Filtering

Add date range to search:

  • 2020:2024[dp]

  • Publication date range

  • "last 5 years"[dp]

  • Relative date

Example with date filter:

term=cancer+immunotherapy+AND+meta-analysis[pt]+AND+2020:2024[dp]

Output Format

When presenting results, use this format:

Meta-Analyses Found: [N] results

  1. [Title]

  2. [Title] ...

Rate Limits

  • NCBI allows ~3 requests per second - be mindful of this when making multiple searches

  • Always URL-encode search terms with special characters

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