outline-refiner

Outline Refiner (Planner pass, NO PROSE)

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Install skill "outline-refiner" with this command: npx skills add willoscar/research-units-pipeline-skills/willoscar-research-units-pipeline-skills-outline-refiner

Outline Refiner (Planner pass, NO PROSE)

Goal: make the outline auditable by adding an explicit planner stage that answers:

  • Do we have enough mapped evidence per H3?

  • Are the same few papers reused everywhere?

  • Are subsection axes still generic/scaffold-y?

  • Is the outline likely to produce a paper-like structure (final ToC budget: ~6–8 H2; fewer, thicker H3s)?

This is a deterministic “planner” unit: it must not write survey prose.

Inputs

Required:

  • outline/outline.yml

  • outline/mapping.tsv

Optional (best-effort diagnosis; may be missing early in the pipeline):

  • outline/OUTLINE_BUDGET_REPORT.md (if present: explains recent merges; helps interpret mapping/coverage changes)

  • papers/paper_notes.jsonl (for evidence levels)

  • outline/subsection_briefs.jsonl (for axis specificity)

  • GOAL.md (for scope drift hints)

Outputs

  • outline/coverage_report.md (bullets + small tables; NO PROSE)

  • outline/outline_state.jsonl (append-only JSONL; one record per run)

Workflow (planner pass, NO PROSE)

  • Parse outline/outline.yml to enumerate H2 sections + H3 subsections (section sizing / budget).

  • If outline/OUTLINE_BUDGET_REPORT.md exists, use it as the merge/change log so the coverage report can explain why structure changed.

  • Read outline/mapping.tsv and compute per-H3 coverage and reuse hotspots.

  • If papers/paper_notes.jsonl exists, summarize evidence levels (fulltext/abstract/title) for mapped papers.

  • If outline/subsection_briefs.jsonl exists, compute axis specificity (generic vs specific axes) per H3.

  • Optionally use GOAL.md to flag obvious scope drift (keywords not reflected in outline).

  • Write outline/coverage_report.md and append a run record to outline/outline_state.jsonl .

Freeze policy

  • If outline/coverage_report.refined.ok exists, the script will not overwrite outline/coverage_report.md .

Script

Quick Start

  • python .codex/skills/outline-refiner/scripts/run.py --help

  • python .codex/skills/outline-refiner/scripts/run.py --workspace workspaces/<ws>

All Options

  • --workspace <dir> : workspace root

  • --unit-id <U###> : unit id (optional; for logs)

  • --inputs <semicolon-separated> : override inputs (rare; prefer defaults)

  • --outputs <semicolon-separated> : override outputs (rare; prefer defaults)

  • --checkpoint <C#> : checkpoint id (optional; for logs)

Examples

  • Planner-pass diagnostics after section-mapper :

  • python .codex/skills/outline-refiner/scripts/run.py --workspace workspaces/<ws>

Troubleshooting

Issue: report is missing evidence-level or axis-specificity columns

Cause:

  • Optional inputs are missing (no papers/paper_notes.jsonl and/or no outline/subsection_briefs.jsonl ).

Fix:

  • Run paper-notes and/or subsection-briefs , then rerun outline-refiner .

Source Transparency

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